Package: SubVis 2.0.2

SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

Authors:Scott Barlowe <[email protected]>

SubVis_2.0.2.tar.gz
SubVis_2.0.2.zip(r-4.5)SubVis_2.0.2.zip(r-4.4)SubVis_2.0.2.zip(r-4.3)
SubVis_2.0.2.tgz(r-4.4-any)SubVis_2.0.2.tgz(r-4.3-any)
SubVis_2.0.2.tar.gz(r-4.5-noble)SubVis_2.0.2.tar.gz(r-4.4-noble)
SubVis_2.0.2.tgz(r-4.4-emscripten)SubVis_2.0.2.tgz(r-4.3-emscripten)
SubVis.pdf |SubVis.html✨
SubVis/json (API)

# Install 'SubVis' in R:
install.packages('SubVis', repos = c('https://sabarlowe.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 144 downloads 1 mentions 1 exports 45 dependencies

Last updated 8 years agofrom:f822cbf166. Checks:OK: 6 WARNING: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:startSubVis

Dependencies:askpassbase64encBiocGenericsBiostringsbslibcachemclicommonmarkcrayoncurldigestfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDatagluehtmltoolshttpuvhttrIRangesjquerylibjsonlitelaterlifecyclemagrittrmemoisemimeopensslpromisesR6rappdirsRcpprlangS4VectorssassshinysourcetoolssysUCSC.utilswithrxtableXVectorzlibbioc

SubVis

Scott Barlowe, Heather Coan, and Robert Youker

Rendered fromSubVis.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2017-05-23
Started: 2016-06-16